It occurred to me an issue that may be why this is currenlty as is. If you have the same card as a want in two different collections, how would it know which collection to add the card to? For example, if you have a card as a want for set-building and PC, then it probably makes sense to drop it in the main collection for you to decide where it should go.
Perhaps as was discussed regarding the new feature most cards could go to the collection with the want, but if it's more than one-to-one it would go to the main collection for the user to decide.